PUBLICATIONS

2025

Deep Learning-Based Image Classification Reveals Heterogeneous Execution of Cell Death Fates During Viral Infection. Edoardo Centofanti, Alon Oyler-Yaniv and Jennifer Oyler-Yaniv. 2025. Molecular Biology of the Cell. 36 (3)

2024

Synergy Between TNF and Proteostatic Stress Drives Cell Death and Guard Immunity. Matthew Sonnett, Edoardo Centofanti, Sanne Boersma, Max Brambach, Leonid Peshkin, Roubina Tatavosian, Alon Oyler-Yaniv and Jennifer Oyler-Yaniv. 2024. BioRxiv. doi: https://doi.org/10.1101/2024.06.12.598679

Tetrahedral Serial Multiview Microscopy and Image Fusion for Improved Resolution and Extent in Stained Zebrafish Embryos. Johanna B Kroll, Anna Cha Alon Oyler-Yaniv, Talley Lambert, Ian A Swinburne, Andrew Murphy, Sean G Megason. 2024. Developmental Dynamics. 253 (7): 690-704.

Teach Creativity in Science Higher Education. Yanai I, Bogler O, Carroll SB, Couch J, Dahlberg ML, Fuhrmann CN, Kaufman JC, Majumdar S, Oyler-Yaniv J, Priestly RD, Stearns T, Stern B, Vinson V, Yamamoto KR, and Lercher MJ. 2024. Science. 384(6711). Listen to a related Night Science podcast Jen recorded with Itai Yanai and Martin Lercher on the idea of creative frustration in science and the arts.

2023

The Spread of Interferon-γ in Melanomas is Highly Spatially Confined, Driving Non-Genetic Variability in Tumor Cells. Edoardo Centofanti#, Chad Wang#, Sandhya Iyer#, Oleg Krichevsky, Alon Oyler-Yaniv, and Jennifer Oyler-Yaniv, 2023. Proceedings of the National Academies of Sciences. 120 (35) e2304190120. #equal contribution, Press coverage can be found here.

Pre-2022

TNF Controls a Speed-Accuracy Tradeoff in Apoptotic Decision to Restrict Viral Spread. Jennifer Oyler- Yaniv#, Alon Oyler-Yaniv#, Evan Maltz, and Roy Wollman, 2021. Nature Communications. 12, 2992.

Constitutive Activation of the B Cell Receptor Underlies Dysfunctional Signaling in Chronic Lymphocytic Leukemia. Carly G K Ziegler, Joel Kim, Kelly Piersanti, Alon Oyler-Yaniv, Kimon V Argyropoulos, Marcel R M van den Brink, M Lia Palomba, Nihal Altan-Bonnet, Grégoire Altan-Bonnet, 2019. Cell Reports. 28 (4): 923-937.

Imaging Cytokine Concentration Fields Using PlaneView Imaging Devices. Alon Oyler-Yaniv and Oleg Krichevsky, 2018. Bio Protoc. 8 (7):e2788.

Catch-and-Release Signaling Enables Long-Term Gene Expression Changes in Response to Transient Inflammatory Stimulus. Jennifer Oyler-Yaniv, Alon Oyler-Yaniv, Mojdeh Shakiba, Nina K. Min, Oleg Krichevsky, Nihal Altan-Bonnet, and Grégoire Altan-Bonnet, 2017 Molecular Cell, 66 (5), 635-647.

A Tunable Diffusion-Consumption Mechanism Allows Plasticity in Cell-to-Cell Communication in the Immune System. Alon Oyler-Yaniv, Jennifer Oyler-Yaniv, Benjamin M. Whitlock, Zhiduo Liu, Ronald N. Germain, Morgan Huse, Grégoire Altan-Bonnet, and Oleg Krichevsky, 2017 Immunity, 46, 4, 609-620.

Cytotoxic T Cells Use Mechanical Force to Potentiate Target Cell Killing. Basu R#, Whitlock BM#, Husson J#, Le Floc’h A, Jin W, Oyler-Yaniv A, Dotiwala F, Giannone G, Hivroz C, Biais N, Lieberman J, Kam LC, and Huse M, 2016 Cell, 165 (1) 100-1110.

Scanning Fluorescence Correlation Spectroscopy as a Versatile Tool to Measure Static and Dynamic Properties of Soft Matter Systems. Manish Nepal#, Alon Oyler-Yaniv#, and Oleg Krichevsky, 2015 Soft Matter, 11, 8939-8947.

A Small-Molecule c-Rel Inhibitor Reduces Alloactivation of T cells Without Compromising Antitumor Activity. Yusuke Shono, Andrea Z Tuckett, Samedy Ouk, Hsiou-Chi Liou, Grégoire Altan-Bonnet, Jennifer J. Tsai, Jennifer E. Oyler, Odette M. Smith, Mallory L. West, Natalie V. Singer, Ekaterina Doubrovina, Dmitry Pankov, Chandresh V. Undhad, George F. Murphy, Cecilia Lezcano, Chen Liu, Richard J. O’Reilly, Marcel RM van den Brink, Johannes L. Zakrzewski, 2014 Cancer Discovery, 4(5) 578-591.

Structure of DNA Coils in Dilute and Semidilute Solutions. Manish Nepal, Alon Yaniv, Eyal Shafran, and Oleg Krichevsky, 2013 Physical Review Letters 110, 058102.

Convergent Evolution of Hyperswarming Leads to Impaired Biofilm Formation in Pathogenic Bacteria. Dave Van Ditmarsch, Kerry E. Boyle, Hassan Sakhtah, Jennifer E. Oyler, Carey D. Nadell, Éric Déziel, Lars E.P. Dietrich, and Joao B. Xavier, 2013 Cell Reports, 4(4), 697-708.

Interaction of lipocalin 2, transferrin, and siderophores determines the replicative niche of Klebsiella pneumoniae during pneumonia. Michael A. Bachman, Steven Lenio, Lindsay Schmidt, Jennifer E. Oyler, and Jeffrey N. Weiser, 2012 mBio, 3(6).

Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection Through Evasion of Lipocalin 2. Michael A. Bachman, Jennifer E. Oyler, Samuel H. Burns, Mélissa Caza François Lépine, Charles M. Dozois, and Jeffrey N. Weiser, 2011 Infection and Immunity, 79(8) 3309-3316.

Marginal Nature of DNA Solutions. Eyal Shafran, Alon Yaniv, and Oleg Krichevsky, 2010, Physical Review Letters 104, 128101.